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Crystal structure of the carboxyltransferase domain of acetyl-coenzyme A carboxylase in complex with tepraloxydim
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 276 0.1 M sodium citrate pH 5.5, 8% (w/v) PEG 8000, 10% (v/v) glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 276K
Crystal Properties Matthews coefficient Solvent content 4.34 71.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 247.303 α = 90 b = 124.797 β = 94.32 c = 145.369 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.98 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 99.2 0.082 0.082 1.8 3.4 192220 190725
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 97.5 0.414 0.414 2.8 3.2 18803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 30 9659 98.76 0.189 0.187 0.221 0.2194 RANDOM 39.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 0.02 1.97 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.006 r_dihedral_angle_4_deg 17.627 r_dihedral_angle_3_deg 17.281 r_dihedral_angle_1_deg 6.462 r_scangle_it 3.806 r_scbond_it 2.321 r_mcangle_it 1.645 r_angle_refined_deg 1.535 r_mcbond_it 0.877 r_chiral_restr 0.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.006 r_dihedral_angle_4_deg 17.627 r_dihedral_angle_3_deg 17.281 r_dihedral_angle_1_deg 6.462 r_scangle_it 3.806 r_scbond_it 2.321 r_mcangle_it 1.645 r_angle_refined_deg 1.535 r_mcbond_it 0.877 r_chiral_restr 0.118 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16321 Nucleic Acid Atoms Solvent Atoms 1303 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction SCALEPACK data scaling