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Crystal structure of human purine nucleoside phosphorylase in complex with DATMe-ImmH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.1M HEPES, 0.2 M Lithium sulfate, 25% PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.33 47.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 269.212 α = 90 b = 51.875 β = 90.44 c = 129.069 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9792 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 99.7 0.09 9.8 3.7 70268
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 99.7 0.588 3.7 6987
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 20 68897 3487 97.05 0.226 0.223 0.2188 0.272 0.2714 RANDOM 46.589
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.33 -1.28 7.23 -2.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.512 r_dihedral_angle_4_deg 19.498 r_dihedral_angle_3_deg 19.048 r_dihedral_angle_1_deg 6.389 r_scangle_it 2.409 r_scbond_it 1.542 r_angle_refined_deg 1.432 r_mcangle_it 0.911 r_mcbond_it 0.476 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.512 r_dihedral_angle_4_deg 19.498 r_dihedral_angle_3_deg 19.048 r_dihedral_angle_1_deg 6.389 r_scangle_it 2.409 r_scbond_it 1.542 r_angle_refined_deg 1.432 r_mcangle_it 0.911 r_mcbond_it 0.476 r_chiral_restr 0.1 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13288 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 194
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction