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The N-terminal PAS domain crystal structure of Rv1364c from Mycobacterium tuberculosis at 1.62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 292.16 1.4 M ammonium sulphate, 0.1 M Tris-HCl, 0.1 M sodium chloride, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 292.16K
Crystal Properties Matthews coefficient Solvent content 2.85 56.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 209.069 α = 90 b = 63.823 β = 89.95 c = 61.305 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.808 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 20 98.6 0.087 9 5 101268 101268 1 1 25.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.62 1.65 95.3 0.654 2.77 4.9 4886
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.62 20 98602 93675 4927 96.11 0.183 0.183 0.181 0.21233 0.2108 RANDOM 19.173
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.45 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.965 r_dihedral_angle_4_deg 17.686 r_dihedral_angle_3_deg 13.764 r_dihedral_angle_1_deg 5.415 r_scangle_it 4.315 r_scbond_it 3.206 r_angle_refined_deg 1.437 r_mcangle_it 1.433 r_mcbond_it 1.177 r_angle_other_deg 1.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.965 r_dihedral_angle_4_deg 17.686 r_dihedral_angle_3_deg 13.764 r_dihedral_angle_1_deg 5.415 r_scangle_it 4.315 r_scbond_it 3.206 r_angle_refined_deg 1.437 r_mcangle_it 1.433 r_mcbond_it 1.177 r_angle_other_deg 1.123 r_symmetry_vdw_other 0.26 r_nbd_refined 0.219 r_nbd_other 0.218 r_mcbond_other 0.19 r_nbtor_refined 0.186 r_symmetry_hbond_refined 0.181 r_chiral_restr 0.165 r_xyhbond_nbd_refined 0.163 r_symmetry_vdw_refined 0.16 r_nbtor_other 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4824 Nucleic Acid Atoms Solvent Atoms 657 Heterogen Atoms 132
Software Software Software Name Purpose DENZO data reduction Auto-Rickshaw phasing REFMAC refinement SCALEPACK data scaling