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Crystal structure of Putative alcohol dehedrogenase (YP_298327.1) from RALSTONIA EUTROPHA JMP134 at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.1900M CaCl2, 5.0000% Glycerol, 26.6000% PEG-400, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.35 63.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.841 α = 90 b = 143.841 β = 90 c = 169.011 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.709 99.5 0.123 8.98 117762 -3 27.926
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.17 99.3 0.83 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 29.709 117704 5902 99.89 0.176 0.174 0.1773 0.21 0.2108 RANDOM 24.674
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 0.24 0.49 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.772 r_dihedral_angle_4_deg 14.938 r_dihedral_angle_3_deg 12.208 r_scangle_it 6.435 r_scbond_it 4.478 r_dihedral_angle_1_deg 3.418 r_mcangle_it 2.257 r_angle_refined_deg 1.652 r_mcbond_it 1.213 r_angle_other_deg 0.983
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.772 r_dihedral_angle_4_deg 14.938 r_dihedral_angle_3_deg 12.208 r_scangle_it 6.435 r_scbond_it 4.478 r_dihedral_angle_1_deg 3.418 r_mcangle_it 2.257 r_angle_refined_deg 1.652 r_mcbond_it 1.213 r_angle_other_deg 0.983 r_mcbond_other 0.248 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10282 Nucleic Acid Atoms Solvent Atoms 878 Heterogen Atoms 295
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing