☰ Navigation Tabs
Crystal structure of SusD superfamily protein (YP_001297730.1) from Bacteroides vulgatus ATCC 8482 at 1.55 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.1 277 0.2000M CaCl2, 20.0000% PEG-3350, No Buffer pH 5.1, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.28 46.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.65 α = 90 b = 94.69 β = 90 c = 165.042 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror, vertical and horizontal focussing mirrors 2009-05-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.91162,0.97956,0.97938 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 29.488 98.1 0.105 0.105 8.7 3.6 146647 14.104
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 99.4 0.693 0.693 1.1 3.6 10849
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.55 29.488 146527 7345 97.98 0.174 0.172 0.1815 0.209 0.2155 RANDOM 13.866
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.466 r_dihedral_angle_4_deg 19.756 r_dihedral_angle_3_deg 12.507 r_dihedral_angle_1_deg 5.796 r_scangle_it 3.475 r_scbond_it 2.278 r_angle_refined_deg 1.527 r_mcangle_it 1.432 r_angle_other_deg 0.956 r_mcbond_it 0.864
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.466 r_dihedral_angle_4_deg 19.756 r_dihedral_angle_3_deg 12.507 r_dihedral_angle_1_deg 5.796 r_scangle_it 3.475 r_scbond_it 2.278 r_angle_refined_deg 1.527 r_mcangle_it 1.432 r_angle_other_deg 0.956 r_mcbond_it 0.864 r_mcbond_other 0.277 r_chiral_restr 0.1 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7618 Nucleic Acid Atoms Solvent Atoms 1475 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction