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Structure of Ljungan virus: insight into picornavirus packaging
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.702 r_dihedral_angle_3_deg 18.848 r_dihedral_angle_4_deg 18.736 r_dihedral_angle_1_deg 10.046 r_mcangle_it 7.778 r_mcbond_it 4.429 r_mcbond_other 4.429 r_angle_refined_deg 1.573 r_angle_other_deg 1.04 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.702 r_dihedral_angle_3_deg 18.848 r_dihedral_angle_4_deg 18.736 r_dihedral_angle_1_deg 10.046 r_mcangle_it 7.778 r_mcbond_it 4.429 r_mcbond_other 4.429 r_angle_refined_deg 1.573 r_angle_other_deg 1.04 r_chiral_restr 0.092 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Sample Ljungan virus (type: 87-012)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details Blot for 3 seconds before plunging into liquid ethane (FEI VITROBOT MARK III).
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 5558 Reported Resolution (Å) 3.8 Resolution Method FSC 0.143 CUT-OFF Other Details (Single particle--Applied symmetry: I) Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 (4k x 4k) Electron Dose (electrons/Å**2)
Imaging Experiment 1 Date of Experiment 2015-02-02 Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN HELIUM Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version RECONSTRUCTION RELION