Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction
ELECTRON MICROSCOPY
Sample
Full-length Toll-like receptor 5
Specimen Preparation
Sample Aggregation State
PARTICLE
Staining Type
NEGATIVE
Staining Material
Uranyl Formate
Staining Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
4241
Reported Resolution (Å)
26
Resolution Method
FSC 0.5 CUT-OFF
Other Details
Final maps were calculated from all the particles by back-projection reconstruction.
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Energy minimization
Overall B Value
Fitting Procedure
Details
REFINEMENT PROTOCOL--Rigid body and positional refinement DETAILS--Initial
local fitting was done using Chimera and then the energy of the model was ...
REFINEMENT PROTOCOL--Rigid body and positional refinement DETAILS--Initial
local fitting was done using Chimera and then the energy of the model was
minimized with MODELLER and REFMAC.