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Homology model of avian polyomavirus asymmetric unit
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SIE
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK I Cryogen Name ETHANE Sample Vitrification Details APV
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 5338 Reported Resolution (Å) 11.3 Resolution Method Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (1SIE) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target cross-correlation coefficient Overall B Value Fitting Procedure Details METHOD--rigid body REFINEMENT PROTOCOL--rigid body
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2)
Imaging Experiment 1 Date of Experiment 2007-04-23 Temperature (Kelvin) 90 Microscope Model FEI TECNAI F30 Minimum Defocus (nm) 500 Maximum Defocus (nm) 4900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model GATAN LIQUID NITROGEN Nominal Magnification 39000 Calibrated Magnification 39000 Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL FITTING UCSF Chimera RECONSTRUCTION PFT3DR
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details full CTF correction (FSC cutoff 0.3)