☰ Navigation Tabs
Pig gastric H+/K+-ATPase complexed with aluminium fluoride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3B8E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 4.87 20 mM propionate, 1 mM MgCl2, 0.5 mM AlCl3, 4 mM NaF, 0.3 mM ADP, 3 mM DTT, 10% (w/v) glycerol, pH 4.87, MICRODIALYSIS
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.4 α = 90 b = 109 β = 90 c = 320 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 electron 4.2 2008-04-15 M SINGLE WAVELENGTH
Refinement Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1044 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose MRC model building MRC phasing
Sample HK-ATPase Sample Components HK-ATPase alpha subunit HK-ATPase beta subunit
Specimen Preparation Sample Aggregation State 2D ARRAY Vitrification Instrument REICHERT-JUNG PLUNGER Cryogen Name NITROGEN Sample Vitrification Details
3D Reconstruction Reconstruction Method CRYSTALLOGRAPHY Number of Particles Reported Resolution (Å) 6.5 Resolution Method Other Details Refinement Type Symmetry Type 2D CRYSTAL
Map-Model Fitting and Refinement Id 1 (3B8E) 2 (3B8E) Refinement Space REAL REAL Refinement Protocol RIGID BODY FIT RIGID BODY FIT Refinement Target Cross-correlation coefficient Cross-correlation coefficient Overall B Value Fitting Procedure Details METHOD--Local refinement REFINEMENT PROTOCOL--rigid body METHOD--Local refinement REFINEMENT PROTOCOL--rigid body
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 25
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) 4.2 Microscope Model JEOL KYOTO-3000SFF Minimum Defocus (nm) 3480 Maximum Defocus (nm) 390 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) 73.3 Nominal CS 1.6 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 6000 Calibrated Magnification 59100 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL FITTING Situs RECONSTRUCTION MRC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details Each images were CTF corrected.