3ISE

Structure of mineralized Bfrb (double soak) from Pseudomonas aeruginosa to 2.8A Resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1627735% MPD, 100mM MES, 200mM Li2SO4, pH 6.0, vapor diffusion, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.9858.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 125.712α = 90
b = 203.206β = 90
c = 207.865γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2009-06-15SINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-BMAPS17-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.847.511000.170.1712.977.3131241-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.82.91000.7530.7532.256.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3IS72.847.51131148660099.90.1970.1950.237RANDOM39.53
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.6-1.320.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.067
r_dihedral_angle_4_deg22.687
r_dihedral_angle_3_deg18.916
r_dihedral_angle_1_deg5.296
r_scangle_it3.023
r_scbond_it1.718
r_angle_refined_deg1.553
r_mcangle_it1.024
r_angle_other_deg0.716
r_mcbond_it0.491
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.067
r_dihedral_angle_4_deg22.687
r_dihedral_angle_3_deg18.916
r_dihedral_angle_1_deg5.296
r_scangle_it3.023
r_scbond_it1.718
r_angle_refined_deg1.553
r_mcangle_it1.024
r_angle_other_deg0.716
r_mcbond_it0.491
r_mcbond_other0.126
r_chiral_restr0.075
r_bond_refined_d0.016
r_gen_planes_refined0.005
r_bond_other_d
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms30414
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms546

Software

Software
Software NamePurpose
d*TREKdata scaling
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction