3IQT

Structure of the HPT domain of Sensor protein barA from Escherichia coli CFT073.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52770.05M Calcium Chloride dihydrate, ).1M Bis Tris pH6.5, 30% PEG Monomethyl ether 550, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
1.8633.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 24.316α = 90
b = 60.359β = 108.21
c = 37.156γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2009-08-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97942APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.45099.30.09410.551994919949-315.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.421000.4144.91030

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.435.31992819928101299.20.1430.1430.1410.181RANDOM19.949
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.59-0.040.94-0.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.244
r_dihedral_angle_4_deg24.226
r_dihedral_angle_3_deg11.359
r_sphericity_free5.819
r_dihedral_angle_1_deg5.09
r_scangle_it4.887
r_sphericity_bonded3.28
r_scbond_it3.088
r_mcangle_it2.016
r_angle_refined_deg1.493
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.244
r_dihedral_angle_4_deg24.226
r_dihedral_angle_3_deg11.359
r_sphericity_free5.819
r_dihedral_angle_1_deg5.09
r_scangle_it4.887
r_sphericity_bonded3.28
r_scbond_it3.088
r_mcangle_it2.016
r_angle_refined_deg1.493
r_rigid_bond_restr1.371
r_mcbond_it1.256
r_angle_other_deg0.931
r_mcbond_other0.602
r_chiral_restr0.077
r_bond_refined_d0.016
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms960
Nucleic Acid Atoms
Solvent Atoms141
Heterogen Atoms15

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXDphasing
SHELXEmodel building
SOLVEphasing
RESOLVEphasing
ARP/wARPmodel building
CCP4phasing
Omodel building
Cootmodel building