X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP32330% w/v PEG 2000 MME, 0.1M KSCN, , VAPOR DIFFUSION, HANGING DROP, temperature 323K
Crystal Properties
Matthews coefficientSolvent content
2.1442.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.929α = 90
b = 66.935β = 90
c = 55.863γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-3MIRROR2007-06-14MMOLECULAR REPLACEMENT
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.979APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.328.7298.30.0670.06739.9016.599969996-350.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3897.40.5140.5143.66.5982

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1Z772.328.729630963045698.450.2260.2260.2240.275RANDOM30.25
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.472.49-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.024
r_dihedral_angle_4_deg20.859
r_dihedral_angle_3_deg16.493
r_dihedral_angle_1_deg6.357
r_scangle_it3.844
r_scbond_it2.928
r_mcangle_it1.671
r_angle_refined_deg1.647
r_mcbond_it1.406
r_angle_other_deg1.008
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.024
r_dihedral_angle_4_deg20.859
r_dihedral_angle_3_deg16.493
r_dihedral_angle_1_deg6.357
r_scangle_it3.844
r_scbond_it2.928
r_mcangle_it1.671
r_angle_refined_deg1.647
r_mcbond_it1.406
r_angle_other_deg1.008
r_mcbond_other0.254
r_symmetry_vdw_other0.237
r_nbd_refined0.22
r_nbtor_refined0.19
r_xyhbond_nbd_refined0.186
r_nbd_other0.182
r_symmetry_hbond_refined0.141
r_symmetry_vdw_refined0.132
r_chiral_restr0.103
r_nbtor_other0.091
r_xyhbond_nbd_other0.074
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1623
Nucleic Acid Atoms
Solvent Atoms59
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
HKL-3000phasing
REFMACrefinement
Cootmodel building
HKL-2000data reduction
HKL-2000data scaling