3IFX

Crystal structure of the Spin-labeled KcsA mutant V48R1


X-RAY DIFFRACTION - EPR

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5293200 mM CaCl2, 150 mM KCl, 100 mM HEPES, 19-49% PEG 400, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
4.2871.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 130.97α = 90
b = 76.63β = 125.83
c = 112.97γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDK-B pair of biomorph mirrors for vertical and horizontal focusing2008-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B1.033APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)CC (Half)R Split (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.565099.40.08643.5794678981
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)CC (Half)R Split (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.563.650.04211.73.6

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENT3.5624.847898789840975.140.272670.272670.271090.30218RANDOM110.671
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.22-0.67-0.12-0.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.97
r_dihedral_angle_3_deg26.177
r_dihedral_angle_4_deg15.683
r_dihedral_angle_1_deg6.33
r_angle_refined_deg1.779
r_scangle_it1.681
r_mcangle_it1.511
r_scbond_it0.844
r_mcbond_it0.818
r_chiral_restr0.086
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.97
r_dihedral_angle_3_deg26.177
r_dihedral_angle_4_deg15.683
r_dihedral_angle_1_deg6.33
r_angle_refined_deg1.779
r_scangle_it1.681
r_mcangle_it1.511
r_scbond_it0.844
r_mcbond_it0.818
r_chiral_restr0.086
r_bond_refined_d0.055
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2743
Nucleic Acid Atoms
Solvent Atoms3
Heterogen Atoms49

Software

Software
Software NamePurpose
MOSFLMdata reduction
PHASERphasing
REFMACrefinement
SCALAdata scaling