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Human muscle fructose-1,6-bisphosphatase E69Q mutant in complex with AMP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FJ6 PDB ENTRY 1fj6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 292 1.6M ammonium sulfate, 0.1M MES pH 6.5, 10% 1,4-dioxane, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.13 60.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 218.11 α = 90 b = 234.26 β = 90 c = 71.94 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD two mirrors and double crystal monochromator between them 2008-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 92.7 0.059 22 4.5 138317 128249 -2 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2.01 57.2 0.364 2.1 2.6 7828
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT Rfree PDB ENTRY 1fj6 1.93 50 -2 138317 126899 1289 92.03 0.16847 0.16847 0.16815 0.2067 0.1989 0.2298 RANDOM 35.861
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.13 -0.99 3.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.399 r_dihedral_angle_4_deg 16.113 r_dihedral_angle_3_deg 15.837 r_dihedral_angle_1_deg 6.277 r_scangle_it 4.104 r_scbond_it 2.58 r_angle_refined_deg 1.697 r_mcangle_it 1.505 r_angle_other_deg 1.011 r_mcbond_it 0.845
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.399 r_dihedral_angle_4_deg 16.113 r_dihedral_angle_3_deg 15.837 r_dihedral_angle_1_deg 6.277 r_scangle_it 4.104 r_scbond_it 2.58 r_angle_refined_deg 1.697 r_mcangle_it 1.505 r_angle_other_deg 1.011 r_mcbond_it 0.845 r_mcbond_other 0.248 r_chiral_restr 0.103 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9825 Nucleic Acid Atoms Solvent Atoms 650 Heterogen Atoms 193
Software Software Software Name Purpose MAR345 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling