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Crystal structure of N-terminal domain of Plasmodium falciparum Hsp90 (PF14_0417) in complex with AMPPN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3H80 PDB entry 3H80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 292 0.5M Ammonium sulfate, 1M Lithium sulfate, 0.1M Na citrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.53 51.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.236 α = 90 b = 69.462 β = 90 c = 71.382 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 102 IMAGE PLATE RIGAKU RAXIS IV++ Mirrors 2009-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 50 98.6 0.067 11 6.5 21647 53.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.08 88.9 0.916 4.1 1903
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3H80 2.01 19.67 21619 1104 98.71 0.234 0.232 0.2338 0.273 0.2718 RANDOM 38.657
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.338 r_dihedral_angle_4_deg 13.733 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 5.257 r_angle_other_deg 2.058 r_scangle_it 1.591 r_angle_refined_deg 1.093 r_scbond_it 0.925 r_mcangle_it 0.809 r_mcbond_it 0.438
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.338 r_dihedral_angle_4_deg 13.733 r_dihedral_angle_3_deg 12.887 r_dihedral_angle_1_deg 5.257 r_angle_other_deg 2.058 r_scangle_it 1.591 r_angle_refined_deg 1.093 r_scbond_it 0.925 r_mcangle_it 0.809 r_mcbond_it 0.438 r_mcbond_other 0.056 r_chiral_restr 0.052 r_bond_other_d 0.019 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1784 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction