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b-glucan binding domain of Drosophila GNBP3 defines a novel family of pattern recognition receptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.2M zinc acetate dehydrate, 18% PEG 8000, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 41.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.53 α = 90 b = 30.68 β = 107.57 c = 51.65 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.03320 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 46.52 98.8 0.067 12.2 3.6 36216 36216 14.135
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.52 95.6 0.296 4.1 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 29.85 34308 34308 1807 99.13 0.1871 0.16686 0.16525 0.2022 0.19811 0.2251 RANDOM 11.226
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.466 r_dihedral_angle_4_deg 17.138 r_dihedral_angle_3_deg 11.212 r_dihedral_angle_1_deg 6.756 r_scangle_it 2.599 r_scbond_it 1.881 r_angle_refined_deg 1.433 r_mcangle_it 1.231 r_mcbond_it 0.862 r_angle_other_deg 0.795
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.466 r_dihedral_angle_4_deg 17.138 r_dihedral_angle_3_deg 11.212 r_dihedral_angle_1_deg 6.756 r_scangle_it 2.599 r_scbond_it 1.881 r_angle_refined_deg 1.433 r_mcangle_it 1.231 r_mcbond_it 0.862 r_angle_other_deg 0.795 r_mcbond_other 0.238 r_nbd_other 0.21 r_symmetry_vdw_other 0.196 r_nbd_refined 0.193 r_nbtor_refined 0.193 r_xyhbond_nbd_refined 0.18 r_symmetry_hbond_refined 0.18 r_symmetry_vdw_refined 0.125 r_chiral_restr 0.091 r_nbtor_other 0.088 r_symmetry_metal_ion_refined 0.08 r_metal_ion_refined 0.03 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1612 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 14
Software Software Software Name Purpose DNA data collection PHENIX model building REFMAC refinement XDS data reduction SCALA data scaling PHENIX phasing