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Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with 1-(2,2-Bis-phosphono-ethyl)-3-butyl-pyridinium and isopentenyl pyrophosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 PEG 4000, 200mM Ammonium Sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.34 47.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.398 α = 90 b = 58.398 β = 90 c = 391.809 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97929 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 93.4 0.096 9 10.6 21604
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 73.4 0.227 5 1627
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.15 44.94 21411 1099 93.14 0.191 0.188 0.1867 0.257 0.2545 RANDOM 36.069
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 0.92 1.84 -2.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.474 r_dihedral_angle_4_deg 19.826 r_dihedral_angle_3_deg 16.433 r_dihedral_angle_1_deg 5.477 r_scangle_it 4.46 r_scbond_it 3.01 r_angle_refined_deg 1.784 r_mcangle_it 1.707 r_mcbond_it 1.171 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.474 r_dihedral_angle_4_deg 19.826 r_dihedral_angle_3_deg 16.433 r_dihedral_angle_1_deg 5.477 r_scangle_it 4.46 r_scbond_it 3.01 r_angle_refined_deg 1.784 r_mcangle_it 1.707 r_mcbond_it 1.171 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.257 r_symmetry_vdw_refined 0.235 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.2 r_chiral_restr 0.124 r_bond_refined_d 0.021 r_metal_ion_refined 0.017 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2891 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms 37
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction