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Trypanosoma cruzi farnesyl diphosphate synthase homodimer in complex with minodronate and isopentenyl disphosphate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 PEG 4000, 200mM Ammonium Sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.31 46.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.1 α = 90 b = 58.1 β = 90 c = 390.567 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2005-10-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 92.2 0.09 8.4 8.9 15342
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 71 0.526 6.1 1115
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 39.81 15221 772 92.15 0.184 0.181 0.1788 0.259 0.2537 RANDOM 39.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.83 1.41 2.83 -4.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.598 r_dihedral_angle_4_deg 22.815 r_dihedral_angle_3_deg 18.407 r_dihedral_angle_1_deg 5.474 r_scangle_it 3.841 r_scbond_it 2.493 r_angle_refined_deg 1.861 r_mcangle_it 1.533 r_mcbond_it 0.906 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.598 r_dihedral_angle_4_deg 22.815 r_dihedral_angle_3_deg 18.407 r_dihedral_angle_1_deg 5.474 r_scangle_it 3.841 r_scbond_it 2.493 r_angle_refined_deg 1.861 r_mcangle_it 1.533 r_mcbond_it 0.906 r_nbtor_refined 0.31 r_symmetry_hbond_refined 0.278 r_symmetry_vdw_refined 0.27 r_nbd_refined 0.236 r_xyhbond_nbd_refined 0.235 r_chiral_restr 0.189 r_metal_ion_refined 0.032 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2891 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 51
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction