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CRYSTAL STRUCTURE OF A SUSD-LIKE CARBOHYDRATE BINDING PROTEIN (BF0978) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.35 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 277 20.0000% iso-Propanol, 20.0000% PEG-4000, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.12 41.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.685 α = 90 b = 66.415 β = 90 c = 162.74 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-03-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97932,0.97918 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 29.223 96.1 0.054 10.18 3.48 112883 -3 10.027
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 89.6 0.502 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.35 29.223 112791 5645 98.68 0.139 0.138 0.1388 0.157 0.1569 RANDOM 13.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 0.53 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.105 r_dihedral_angle_4_deg 12.571 r_dihedral_angle_3_deg 9.799 r_dihedral_angle_1_deg 4.57 r_scangle_it 3.568 r_scbond_it 2.731 r_mcangle_it 1.768 r_angle_refined_deg 1.526 r_mcbond_it 1.435 r_angle_other_deg 1.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.105 r_dihedral_angle_4_deg 12.571 r_dihedral_angle_3_deg 9.799 r_dihedral_angle_1_deg 4.57 r_scangle_it 3.568 r_scbond_it 2.731 r_mcangle_it 1.768 r_angle_refined_deg 1.526 r_mcbond_it 1.435 r_angle_other_deg 1.075 r_mcbond_other 0.336 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.215 r_nbd_other 0.194 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.185 r_symmetry_vdw_other 0.141 r_symmetry_vdw_refined 0.102 r_nbtor_other 0.089 r_chiral_restr 0.064 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4107 Nucleic Acid Atoms Solvent Atoms 743 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing