3I2K

Cocaine Esterase, wild type, bound to a DTT adduct


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529310mM Tris pH 7.5, 25 mM NaCl, 1.6 M Ammonium Sulfate, 10mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8256.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.513α = 90
b = 105.513β = 90
c = 222.377γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray2007-04-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.000APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.51401000.0769.58.1114633
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.511.561000.5445.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDifference fourierTHROUGHOUTPDB: 1JU31.5120114339572299.920.145680.145680.152RANDOM11.917
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.010.01-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.661
r_dihedral_angle_4_deg12.983
r_dihedral_angle_3_deg11.206
r_dihedral_angle_1_deg6.357
r_scangle_it2.563
r_scbond_it1.581
r_angle_refined_deg1.21
r_mcangle_it0.983
r_angle_other_deg0.834
r_mcbond_it0.532
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.661
r_dihedral_angle_4_deg12.983
r_dihedral_angle_3_deg11.206
r_dihedral_angle_1_deg6.357
r_scangle_it2.563
r_scbond_it1.581
r_angle_refined_deg1.21
r_mcangle_it0.983
r_angle_other_deg0.834
r_mcbond_it0.532
r_symmetry_vdw_other0.242
r_symmetry_vdw_refined0.187
r_symmetry_hbond_refined0.168
r_xyhbond_nbd_refined0.166
r_mcbond_other0.12
r_chiral_restr0.072
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4383
Nucleic Acid Atoms
Solvent Atoms862
Heterogen Atoms39

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction