3HUE

Structure of the S. pombe Nbs1 FHA-BRCT1-BRCT2 domains


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62811.2-1.4M potassium formate, 100mM sodium acetate pH 4.6, 5% w/v polyethylene glycol 8000, VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties
Matthews coefficientSolvent content
2.2645.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.671α = 90
b = 204.538β = 90
c = 62.897γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-09-06MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 12.3.10.9796, 0.9797ALS12.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85099.90.113.94.3167231672312.7554
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.91000.4262.754.21667

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.85018612861244199.860.238260.238260.235890.28518RANDOM33.642
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.38-2.222.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.656
r_dihedral_angle_3_deg20.978
r_dihedral_angle_4_deg16.525
r_dihedral_angle_1_deg6.785
r_angle_refined_deg1.758
r_scangle_it1.721
r_scbond_it1.227
r_mcbond_it0.844
r_mcangle_it0.702
r_symmetry_vdw_refined0.358
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.656
r_dihedral_angle_3_deg20.978
r_dihedral_angle_4_deg16.525
r_dihedral_angle_1_deg6.785
r_angle_refined_deg1.758
r_scangle_it1.721
r_scbond_it1.227
r_mcbond_it0.844
r_mcangle_it0.702
r_symmetry_vdw_refined0.358
r_nbtor_refined0.286
r_symmetry_hbond_refined0.226
r_xyhbond_nbd_refined0.174
r_nbd_refined0.131
r_chiral_restr0.107
r_bond_refined_d0.019
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2429
Nucleic Acid Atoms
Solvent Atoms68
Heterogen Atoms

Software

Software
Software NamePurpose
HKL-2000data collection
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling