3HQJ | pdb_00003hqj

Structure-function analysis of Mycobacterium tuberculosis acyl carrier protein synthase (AcpS).

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1F7T	PDB ENTRY 1F7T

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		6.5	294	100mM MgCl2, 50mM Na cacodylate pH=6.5, and 25% polyethylene glycol 200, Microbatch under oil, temperature 294K

Crystal Properties
Matthews coefficient	Solvent content
2.74	55.15

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.443	α = 90
b = 77.443	β = 90
c = 77.443	γ = 90

Symmetry
Space Group	P 2 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	RIGAKU RAXIS IV++		2007-09-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU RU300	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	50	99.9			11556	11568

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.95	2.02	100

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1F7T	1.95	50	11012	10999	553	99.88	0.211	0.211	0.20906	0.21	0.25167	0.25	RANDOM	24.946

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.928
r_dihedral_angle_4_deg	20.709
r_dihedral_angle_3_deg	13.435
r_dihedral_angle_1_deg	6.065
r_scangle_it	3.522
r_scbond_it	2.461
r_mcangle_it	1.724
r_angle_refined_deg	1.699
r_mcbond_it	1.056
r_symmetry_hbond_refined	0.327
r_nbtor_refined	0.297
r_nbd_refined	0.207
r_xyhbond_nbd_refined	0.197
r_symmetry_vdw_refined	0.18
r_chiral_restr	0.117
r_symmetry_metal_ion_refined	0.064
r_metal_ion_refined	0.04
r_bond_refined_d	0.017
r_gen_planes_refined	0.006

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	860
Nucleic Acid Atoms
Solvent Atoms	44
Heterogen Atoms	30

Software

Software
Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling