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Crystal structure of Hedgehog-interacting protein (HHIP)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 292 Protein samples (0.3-2 ul) were dehydrated over 500 ul of reservoir solution of 20 mM Hepes pH 7.2 and 3 M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 4.15 70.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.042 α = 90 b = 101.042 β = 90 c = 304.923 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, double crystal monochromator, toroid focusing mirror 2007-02-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97940, 0.97955, 0.91176 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 30 99.8 0.074 21.2 5.3 33725 33657 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 99.2 0.568 2.9 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.1 30 31990 31970 1709 99.94 0.21926 0.21748 0.2102 0.25237 0.2447 RANDOM 72.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.03 1.01 2.03 -3.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.315 r_dihedral_angle_4_deg 20.521 r_dihedral_angle_3_deg 20.045 r_dihedral_angle_1_deg 6.906 r_mcangle_it 3.913 r_scangle_it 3.531 r_mcbond_it 2.331 r_scbond_it 2.178 r_angle_refined_deg 1.203 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.315 r_dihedral_angle_4_deg 20.521 r_dihedral_angle_3_deg 20.045 r_dihedral_angle_1_deg 6.906 r_mcangle_it 3.913 r_scangle_it 3.531 r_mcbond_it 2.331 r_scbond_it 2.178 r_angle_refined_deg 1.203 r_nbtor_refined 0.309 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.169 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.084 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6868 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling