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Tubulin-ABT751: RB3 stathmin-like domain complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SA0 PDB ENTRY 1SA0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 PEG, PIPES BUFFER, pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.88 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 329.24 α = 90 b = 329.24 β = 90 c = 53.87 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.978 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.8 50 97.6 0.052 15.9 4.17 33069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.8 3.89 78.1 0.655 1.94 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SA0 3.8 20 31204 1664 99.35 0.20573 0.20331 0.2643 0.2521 0.3016 RANDOM 50.724
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.57 0.78 1.57 -2.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.561 r_angle_refined_deg 1.738 r_scangle_it 1.154 r_scbond_it 0.703 r_mcangle_it 0.441 r_metal_ion_refined 0.42 r_symmetry_vdw_refined 0.34 r_symmetry_hbond_refined 0.301 r_nbd_refined 0.285 r_mcbond_it 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.561 r_angle_refined_deg 1.738 r_scangle_it 1.154 r_scbond_it 0.703 r_mcangle_it 0.441 r_metal_ion_refined 0.42 r_symmetry_vdw_refined 0.34 r_symmetry_hbond_refined 0.301 r_nbd_refined 0.285 r_mcbond_it 0.222 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13970 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 175
Software Software Software Name Purpose AMoRE phasing REFMAC refinement XDS data reduction XSCALE data scaling