3HF8

Crystal structure of human tryoptophan hydroxylase type 1 with bound LP-533401 and Fe


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5293.15pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
Crystal Properties
Matthews coefficientSolvent content
2.3247

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.278α = 90
b = 58.238β = 97.15
c = 56.554γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDNOIR-1MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 4.2.2ALS4.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8523431

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8523431126194.410.199280.197030.24093RANDOM30.763
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.07-0.041.020.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.141
r_dihedral_angle_4_deg17.058
r_dihedral_angle_3_deg15.138
r_dihedral_angle_1_deg4.84
r_scangle_it2.031
r_scbond_it1.313
r_angle_refined_deg1.081
r_mcangle_it0.936
r_mcbond_it0.533
r_nbtor_refined0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.141
r_dihedral_angle_4_deg17.058
r_dihedral_angle_3_deg15.138
r_dihedral_angle_1_deg4.84
r_scangle_it2.031
r_scbond_it1.313
r_angle_refined_deg1.081
r_mcangle_it0.936
r_mcbond_it0.533
r_nbtor_refined0.3
r_nbd_refined0.19
r_symmetry_vdw_refined0.144
r_xyhbond_nbd_refined0.107
r_symmetry_hbond_refined0.097
r_chiral_restr0.084
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2221
Nucleic Acid Atoms
Solvent Atoms436
Heterogen Atoms39

Software

Software
Software NamePurpose
REFMACrefinement