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Crystal structure of serum and glucocorticoid-regulated kinase 1 in complex with compound 2
Crystallization Crystal Properties Matthews coefficient Solvent content 2.41 48.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.812 α = 90 b = 96.812 β = 90 c = 150.779 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 99.2 8058 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.1 25 7149 423 93.76 0.25119 0.24965 0.2419 0.27842 0.2702 RANDOM 74.506
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.24 1.62 3.24 -4.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.95 r_dihedral_angle_3_deg 12.158 r_dihedral_angle_4_deg 10.717 r_dihedral_angle_1_deg 4.358 r_angle_refined_deg 0.83 r_scangle_it 0.321 r_nbtor_refined 0.303 r_mcangle_it 0.218 r_symmetry_vdw_refined 0.192 r_scbond_it 0.187
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.95 r_dihedral_angle_3_deg 12.158 r_dihedral_angle_4_deg 10.717 r_dihedral_angle_1_deg 4.358 r_angle_refined_deg 0.83 r_scangle_it 0.321 r_nbtor_refined 0.303 r_mcangle_it 0.218 r_symmetry_vdw_refined 0.192 r_scbond_it 0.187 r_nbd_refined 0.163 r_symmetry_hbond_refined 0.127 r_mcbond_it 0.119 r_xyhbond_nbd_refined 0.105 r_chiral_restr 0.055 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2239 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement