X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1microbatch under oil7.529318 % PEG 8000, 0.1M Na HEPES pH 7.5, 0.2M, 0.05M TRIS HCl pH 8 , microbatch under oil, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.6753.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.436α = 90
b = 74.203β = 90
c = 122.941γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2005-03-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7A1.24EMBL/DESY, HAMBURGBW7A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.595097.70.09310.97.031179311522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.69920.3332.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT3HCG2.5924.25118221091254397.180.2150.198370.195880.24737RANDOM26.396
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.440.360.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.509
r_dihedral_angle_3_deg15.066
r_dihedral_angle_4_deg14.468
r_dihedral_angle_1_deg5.628
r_scangle_it1.28
r_angle_refined_deg1.137
r_scbond_it0.728
r_mcangle_it0.556
r_nbtor_refined0.301
r_mcbond_it0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.509
r_dihedral_angle_3_deg15.066
r_dihedral_angle_4_deg14.468
r_dihedral_angle_1_deg5.628
r_scangle_it1.28
r_angle_refined_deg1.137
r_scbond_it0.728
r_mcangle_it0.556
r_nbtor_refined0.301
r_mcbond_it0.298
r_symmetry_vdw_refined0.252
r_nbd_refined0.185
r_xyhbond_nbd_refined0.127
r_chiral_restr0.069
r_symmetry_hbond_refined0.046
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2350
Nucleic Acid Atoms
Solvent Atoms96
Heterogen Atoms17

Software

Software
Software NamePurpose
DENZOdata reduction
MOLREPphasing
REFMACrefinement
SCALEPACKdata scaling