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THE COMPLEX STRUCTURE OF THE MAP KINASE P38/Compound 14b
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BMK PDB ENTRY 1BMK
Crystallization Crystal Properties Matthews coefficient Solvent content 2.85 56.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.222 α = 90 b = 87.934 β = 90 c = 121.501 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2008-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 50 97.2 17710 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BMK 2.48 25 17710 15683 982 91.79 0.21685 0.21495 0.2137 0.2478 0.2455 RANDOM 48.544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 -1.79 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.265 r_dihedral_angle_4_deg 17.086 r_dihedral_angle_3_deg 15.202 r_dihedral_angle_1_deg 5.112 r_angle_refined_deg 1.069 r_scangle_it 1.033 r_scbond_it 0.632 r_mcangle_it 0.591 r_mcbond_it 0.325 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.265 r_dihedral_angle_4_deg 17.086 r_dihedral_angle_3_deg 15.202 r_dihedral_angle_1_deg 5.112 r_angle_refined_deg 1.069 r_scangle_it 1.033 r_scbond_it 0.632 r_mcangle_it 0.591 r_mcbond_it 0.325 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.187 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.141 r_xyhbond_nbd_refined 0.124 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2725 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement