3HA1

Alanine racemase from Bacillus Anthracis (Ames)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION6.527718 %PEG 8000, 0.2 M Sodium acetate, 0.1 M Sodium Cacodylate, 0.01 M GSH (L-Glutathione reduced), 0.01 M GSSG (L-Glutathione oxidized), pH 6.5, vapor diffusion, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.3447.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.624α = 90
b = 141.271β = 103.11
c = 60.124γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IVOsmic mirrors2007-11-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9532.7991.30.0290.02914.5262.81503555339629.12
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.952.0667.10.1560.1564.62.15695

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1sft1.9532.7953387162791.130.1610.160.201RANDOM34.692
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.560.55-1.510.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.734
r_dihedral_angle_4_deg14.626
r_dihedral_angle_3_deg13.2
r_dihedral_angle_1_deg7.467
r_scangle_it4.742
r_scbond_it3.226
r_mcangle_it1.912
r_angle_refined_deg1.459
r_mcbond_it1.273
r_chiral_restr0.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.734
r_dihedral_angle_4_deg14.626
r_dihedral_angle_3_deg13.2
r_dihedral_angle_1_deg7.467
r_scangle_it4.742
r_scbond_it3.226
r_mcangle_it1.912
r_angle_refined_deg1.459
r_mcbond_it1.273
r_chiral_restr0.12
r_bond_refined_d0.017
r_gen_planes_refined0.014
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6068
Nucleic Acid Atoms
Solvent Atoms358
Heterogen Atoms10

Software

Software
Software NamePurpose
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
MOSFLMdata reduction
MOLREPphasing