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Hepatitis C virus polymerase NS5B with saccharin inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.9 293 50 mM Na Citrate pH 4.9, 26% PEG 4000, 7.5% glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 44.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.631 α = 90 b = 105.803 β = 90 c = 125.632 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97946 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 98.2 0.195 8.21 6.2 77668 76285 19.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 88.1 0.866 1.27 4.6 6717
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 36.59 72364 3831 98.26 0.20453 0.20209 0.207 0.24988 0.2511 RANDOM 17.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 1.55 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.389 r_dihedral_angle_3_deg 14.076 r_dihedral_angle_4_deg 13.764 r_dihedral_angle_1_deg 6.037 r_scangle_it 2.691 r_scbond_it 1.733 r_angle_refined_deg 1.31 r_mcangle_it 1.226 r_angle_other_deg 0.916 r_mcbond_it 0.747
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.389 r_dihedral_angle_3_deg 14.076 r_dihedral_angle_4_deg 13.764 r_dihedral_angle_1_deg 6.037 r_scangle_it 2.691 r_scbond_it 1.733 r_angle_refined_deg 1.31 r_mcangle_it 1.226 r_angle_other_deg 0.916 r_mcbond_it 0.747 r_symmetry_vdw_other 0.253 r_symmetry_hbond_refined 0.207 r_nbd_refined 0.206 r_nbd_other 0.193 r_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.178 r_symmetry_vdw_refined 0.175 r_mcbond_other 0.144 r_nbtor_other 0.084 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8758 Nucleic Acid Atoms Solvent Atoms 770 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling