Experiment: 3H5A

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8	277.2	2.1 M NaCl, 100 mM Tris-HCl pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277.2K

Crystal Properties
Matthews coefficient	Solvent content
5.18	76.24

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 144.649	α = 90
b = 145.035	β = 90
c = 158.688	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315r		2007-05-09	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALS BEAMLINE 8.2.1	1.28290, 1.28330, 1.25000	ALS	8.2.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.8	50	100	0.101	27.217	7	81993	81993			71.2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.8	2.9	99.8		0.378		6.5	8093

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	2.8	49.69	81819	4120	98.78	0.224	0.223	0.255	RANDOM	53.742

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.84			-0.38		2.22

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.206
r_dihedral_angle_3_deg	21.186
r_dihedral_angle_4_deg	18.009
r_dihedral_angle_1_deg	6.452
r_scangle_it	2.973
r_scbond_it	2.007
r_angle_refined_deg	1.509
r_mcangle_it	1.487
r_mcbond_it	0.969
r_nbtor_refined	0.319

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.206
r_dihedral_angle_3_deg	21.186
r_dihedral_angle_4_deg	18.009
r_dihedral_angle_1_deg	6.452
r_scangle_it	2.973
r_scbond_it	2.007
r_angle_refined_deg	1.509
r_mcangle_it	1.487
r_mcbond_it	0.969
r_nbtor_refined	0.319
r_nbd_refined	0.237
r_symmetry_vdw_refined	0.235
r_symmetry_hbond_refined	0.195
r_xyhbond_nbd_refined	0.168
r_chiral_restr	0.103
r_bond_refined_d	0.013
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11061
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	4

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
BOS	data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.