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Crystal structure of EstE5-PMSF (II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FAK PDB ENTRY 3FAK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.1M Tris-HCl pH 7.5, 2.2M ammonium sulfate, 0.2M lithium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.03 39.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.283 α = 90 b = 61.283 β = 90 c = 149.894 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6C1 1.23 PAL/PLS 6C1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 91.5 10880 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 57.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FAK 2.4 28.36 10880 10338 529 91.87 0.18776 0.18422 0.18422 0.2044 0.25986 0.2 RANDOM 38.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.92 0.92 -1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.481 r_dihedral_angle_3_deg 21.592 r_dihedral_angle_4_deg 20.632 r_dihedral_angle_1_deg 8.724 r_scangle_it 4.638 r_scbond_it 3.244 r_angle_refined_deg 2.614 r_mcangle_it 1.925 r_mcbond_it 1.266 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.481 r_dihedral_angle_3_deg 21.592 r_dihedral_angle_4_deg 20.632 r_dihedral_angle_1_deg 8.724 r_scangle_it 4.638 r_scbond_it 3.244 r_angle_refined_deg 2.614 r_mcangle_it 1.925 r_mcbond_it 1.266 r_nbtor_refined 0.319 r_xyhbond_nbd_refined 0.257 r_nbd_refined 0.242 r_symmetry_vdw_refined 0.199 r_chiral_restr 0.18 r_bond_refined_d 0.03 r_symmetry_hbond_refined 0.02 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2214 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 20
Software Software Software Name Purpose HKL-2000 data collection CNS refinement REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing