☰ Navigation Tabs
Crystal Structure of holo PfACP Reduced Monomer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GZL pdb entry 3GZL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 296 3.03M NaMalonate, 80mM BME, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.03 39.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.177 α = 90 b = 54.177 β = 90 c = 101.629 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 mirrors 2006-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54168
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 38.32 95.4 0.1986 31.05 44.77 13930
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.65 72.8 0.9493 2.85 5.18 3900
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3GZL 1.8 38.32 13930 754 99.99 0.20919 0.20562 0.2039 0.27607 0.2757 RANDOM 22.915
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.349 r_dihedral_angle_3_deg 16.333 r_dihedral_angle_1_deg 5.21 r_scangle_it 5.185 r_scbond_it 3.505 r_mcangle_it 2.113 r_angle_refined_deg 2.112 r_mcbond_it 1.35 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.349 r_dihedral_angle_3_deg 16.333 r_dihedral_angle_1_deg 5.21 r_scangle_it 5.185 r_scbond_it 3.505 r_mcangle_it 2.113 r_angle_refined_deg 2.112 r_mcbond_it 1.35 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.273 r_nbd_refined 0.264 r_symmetry_hbond_refined 0.198 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.167 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1258 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 146
Software Software Software Name Purpose PROTEUM PLUS data collection PHASER phasing REFMAC refinement SAINT data reduction PROTEUM PLUS data scaling