3GZL

Crystal Structure of holo PfACP Disulfide-Linked Dimer


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52963.06M NaMalonate, 2mM BME, 1mM CuCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
3.1460.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.675α = 90
b = 48.675β = 90
c = 97.588γ = 90
Symmetry
Space GroupI 41

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293CCDBruker Platinum 135mirrors2006-01-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54168

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4943.5699.60.067912.955.6439973981
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.492.5998.70.33363.144.09447

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 1T8K2.5543.56355015999.780.24180.240620.26703RANDOM70.027
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.02-0.020.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.748
r_dihedral_angle_3_deg14.982
r_dihedral_angle_1_deg4.019
r_mcangle_it1.212
r_angle_refined_deg1.005
r_mcbond_it0.679
r_scangle_it0.599
r_scbond_it0.392
r_nbtor_refined0.295
r_symmetry_hbond_refined0.213
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.748
r_dihedral_angle_3_deg14.982
r_dihedral_angle_1_deg4.019
r_mcangle_it1.212
r_angle_refined_deg1.005
r_mcbond_it0.679
r_scangle_it0.599
r_scbond_it0.392
r_nbtor_refined0.295
r_symmetry_hbond_refined0.213
r_symmetry_vdw_refined0.191
r_nbd_refined0.189
r_xyhbond_nbd_refined0.12
r_chiral_restr0.058
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms642
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms22

Software

Software
Software NamePurpose
PROTEUM PLUSdata collection
PHASERphasing
REFMACrefinement
SAINTdata reduction
PROTEUM PLUSdata scaling