☰ Navigation Tabs
Crystal structure of putative acetyltransferase (YP_001815201.1) from EXIGUOBACTERIUM SP. 255-15 at 1.62 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 3.2M ammonium sulfate, 0.1M MES pH 6.0, Additive: 0.001 M acetyl Co-enzyme A, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.36 47.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.793 α = 90 b = 66.249 β = 90 c = 87.769 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Vertical focusing mirror 2008-07-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.918370,0.979394,0.978882 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 27.896 99 0.078 0.078 12.3 3.9 20813 19.242
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.62 1.66 98.4 0.668 0.668 1.9 4 1514
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.62 27.896 20778 1069 98.6 0.18 0.179 0.1854 0.204 0.2063 RANDOM 28.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.07 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.134 r_dihedral_angle_4_deg 17.459 r_dihedral_angle_3_deg 13.033 r_dihedral_angle_1_deg 5.705 r_scangle_it 5.684 r_scbond_it 4.359 r_mcangle_it 2.599 r_mcbond_it 1.869 r_angle_refined_deg 1.443 r_angle_other_deg 0.921
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.134 r_dihedral_angle_4_deg 17.459 r_dihedral_angle_3_deg 13.033 r_dihedral_angle_1_deg 5.705 r_scangle_it 5.684 r_scbond_it 4.359 r_mcangle_it 2.599 r_mcbond_it 1.869 r_angle_refined_deg 1.443 r_angle_other_deg 0.921 r_symmetry_vdw_refined 0.475 r_mcbond_other 0.471 r_symmetry_vdw_other 0.363 r_nbd_refined 0.202 r_nbd_other 0.194 r_symmetry_hbond_refined 0.187 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.157 r_nbtor_other 0.083 r_chiral_restr 0.079 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1160 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing