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Crystal structure of escherichia coli ybhc
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 SODIUM CITRATE, AMMONIUM PHOSPHATE, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.15 60.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.2 α = 90 b = 79.2 β = 90 c = 159.65 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2007-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 0.98 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 68 99.9 0.118 14.2 10.1 64564 64564
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 100 0.663 6.3 9.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 30 63238 63238 1308 100 0.193 0.193 0.193 0.1978 0.208 0.2121 RANDOM 13.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.03 -0.05 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.717 r_dihedral_angle_4_deg 15.494 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 6.183 r_scangle_it 4.758 r_scbond_it 3.433 r_mcangle_it 2.175 r_angle_refined_deg 1.874 r_mcbond_it 1.816 r_angle_other_deg 1.027
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.717 r_dihedral_angle_4_deg 15.494 r_dihedral_angle_3_deg 13.084 r_dihedral_angle_1_deg 6.183 r_scangle_it 4.758 r_scbond_it 3.433 r_mcangle_it 2.175 r_angle_refined_deg 1.874 r_mcbond_it 1.816 r_angle_other_deg 1.027 r_mcbond_other 0.424 r_symmetry_vdw_other 0.272 r_nbd_refined 0.224 r_nbd_other 0.216 r_symmetry_vdw_refined 0.211 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.122 r_nbtor_other 0.091 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3044 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms
Software Software Software Name Purpose ProDC data collection SHELXS phasing REFMAC refinement XDS data reduction XSCALE data scaling