X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.62980.1 M sodium acetate pH 4.6, 0.2 M ammonium acetate, 30% PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1743.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.599α = 90
b = 38.409β = 125.27
c = 75.012γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 315rMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.1159ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4625.0899.70.048134.128224
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.461.5398.50.3423.53.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.4625.0826767142799.90.161380.159640.19218RANDOM15.558
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.450.52-0.050.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.784
r_dihedral_angle_3_deg14.246
r_dihedral_angle_4_deg13.671
r_sphericity_free11.068
r_scangle_it6.264
r_sphericity_bonded5.567
r_dihedral_angle_1_deg4.947
r_scbond_it4.349
r_mcangle_it3.139
r_rigid_bond_restr2.157
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg25.784
r_dihedral_angle_3_deg14.246
r_dihedral_angle_4_deg13.671
r_sphericity_free11.068
r_scangle_it6.264
r_sphericity_bonded5.567
r_dihedral_angle_1_deg4.947
r_scbond_it4.349
r_mcangle_it3.139
r_rigid_bond_restr2.157
r_mcbond_it2.119
r_angle_refined_deg1.851
r_angle_other_deg1.413
r_mcbond_other1.031
r_symmetry_vdw_other0.324
r_symmetry_vdw_refined0.168
r_xyhbond_nbd_refined0.124
r_symmetry_hbond_refined0.12
r_chiral_restr0.113
r_bond_refined_d0.022
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1305
Nucleic Acid Atoms
Solvent Atoms200
Heterogen Atoms4

Software

Software
Software NamePurpose
Blu-Icedata collection
EPMRphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling