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HCV NS5B polymerase in complex with 1,5 benzodiazepine inhibitor 4c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CSO PDB ENTRY 3CSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.75 293 5-8% PEG 6000, 100mM Mg-Salts, pH 6.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.534 α = 90 b = 107.573 β = 90 c = 133.657 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.91990 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 75.59 98.5 0.158 6.3 61475 61475
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.39 2.46 98 0.607 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB ENTRY 3CSO 2.39 75.59 57548 57548 3028 98.54 0.16916 0.16916 0.16662 0.197 0.21708 0.241 RANDOM 27.694
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.82 -1.4 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.538 r_dihedral_angle_4_deg 19.379 r_dihedral_angle_3_deg 16.209 r_dihedral_angle_1_deg 6.145 r_scangle_it 3.277 r_scbond_it 2.267 r_mcangle_it 1.508 r_angle_refined_deg 1.4 r_mcbond_it 1.214 r_angle_other_deg 0.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.538 r_dihedral_angle_4_deg 19.379 r_dihedral_angle_3_deg 16.209 r_dihedral_angle_1_deg 6.145 r_scangle_it 3.277 r_scbond_it 2.267 r_mcangle_it 1.508 r_angle_refined_deg 1.4 r_mcbond_it 1.214 r_angle_other_deg 0.816 r_symmetry_vdw_refined 0.252 r_symmetry_vdw_other 0.237 r_symmetry_hbond_refined 0.229 r_nbd_refined 0.204 r_mcbond_other 0.191 r_nbd_other 0.183 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.146 r_nbtor_other 0.087 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8791 Nucleic Acid Atoms Solvent Atoms 498 Heterogen Atoms 91
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling