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Crystal Structure of Dicamba Monooxygenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 5% PEG 4000, 100 mM sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.59 52.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.026 α = 90 b = 81.026 β = 90 c = 158.154 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Bent conical Rh coated Si mirror 2007-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.9 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 70 99.3 0.066 31.5 7.9 117257 116444
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 100 0.665 2.2 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 42.15 117257 110605 5839 99.33 0.16484 0.16311 0.178 0.19789 0.2158 RANDOM 17.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.07 0.15 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.011 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_3_deg 14.288 r_dihedral_angle_1_deg 8.239 r_scangle_it 5.669 r_mcangle_it 4.313 r_scbond_it 4.251 r_mcbond_it 3.307 r_mcbond_other 1.285 r_angle_refined_deg 1.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.011 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_3_deg 14.288 r_dihedral_angle_1_deg 8.239 r_scangle_it 5.669 r_mcangle_it 4.313 r_scbond_it 4.251 r_mcbond_it 3.307 r_mcbond_other 1.285 r_angle_refined_deg 1.224 r_angle_other_deg 0.718 r_symmetry_vdw_other 0.337 r_symmetry_vdw_refined 0.225 r_xyhbond_nbd_refined 0.192 r_symmetry_hbond_refined 0.19 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7674 Nucleic Acid Atoms Solvent Atoms 851 Heterogen Atoms 68
Software Software Software Name Purpose ADSC data collection SHELXDE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling