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Crystal structure from the mobile metagenome of Vibrio cholerae. Integron cassette protein VCH_CASS2.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.5 294 0.1M Citric acid, 25% PEG 3350, pH 3.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.5 50.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.378 α = 90 b = 59.378 β = 90 c = 95.756 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97953 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.89 99.6 0.062 0.079 21 9.9 34832 34832 27.219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 99.7 0.561 0.624 3.6 9.9 2650
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 35.041 34832 34832 1782 99.56 0.1852 0.1852 0.1832 0.1832 0.2269 0.2238 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_bond_d_na 1.047 f_bond_d 0.007 f_bond_d_prot f_angle_d f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d
RMS Deviations Key Refinement Restraint Deviation f_bond_d_na 1.047 f_bond_d 0.007 f_bond_d_prot f_angle_d f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d f_dihedral_angle_d_na f_dihedral_angle_d_prot f_improper_angle_d f_improper_angle_d_na f_improper_angle_d_prot f_mcbond_it f_mcangle_it f_scbond_it f_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1220 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 17
Software Software Software Name Purpose ADSC data collection AutoSol phasing PHENIX refinement MOSFLM data reduction SCALA data scaling