☰ Navigation Tabs
Glutaconyl-coA decarboxylase A subunit from Clostridium symbiosum co-crystallized with glutaconyl-coA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PIX
Crystallization Crystal Properties Matthews coefficient Solvent content 2.37 48.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.36 α = 90 b = 144.36 β = 90 c = 167.15 γ = 90
Symmetry Space Group F 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2008-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 37.349 97.9 0.046 0.046 10.391 3.9 60672
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 99.7 0.262 0.262 2.9 3.7 8956
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PIX 1.75 36.15 60667 2426 97.66 0.163 0.163 0.176 0.1816 RANDOM 23.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 -1.15 2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.685 r_dihedral_angle_4_deg 16.292 r_dihedral_angle_3_deg 11.577 r_dihedral_angle_1_deg 6.974 r_scangle_it 2.245 r_scbond_it 1.405 r_angle_refined_deg 1.173 r_mcangle_it 0.884 r_mcbond_it 0.537 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.685 r_dihedral_angle_4_deg 16.292 r_dihedral_angle_3_deg 11.577 r_dihedral_angle_1_deg 6.974 r_scangle_it 2.245 r_scbond_it 1.405 r_angle_refined_deg 1.173 r_mcangle_it 0.884 r_mcbond_it 0.537 r_nbtor_refined 0.304 r_nbd_refined 0.191 r_xyhbond_nbd_refined 0.179 r_symmetry_vdw_refined 0.159 r_symmetry_hbond_refined 0.135 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4346 Nucleic Acid Atoms Solvent Atoms 465 Heterogen Atoms 54
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection MOSFLM data reduction