☰ Navigation Tabs
Crystal structure glycohydrolase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CWC PDB ENTRY 2CWC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.1M Hepes, pH7.5, 15% PEG 20000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.76 55.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.866 α = 90 b = 163.866 β = 90 c = 46.274 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2007-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 25 94.8 0.076 0.118 14.3 7.9 24409 -3 -3 39.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 91.9 0.2 0.365 4.8 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CWC 2.5 25 -3 -3 23135 2756 97.6 0.26638 0.20207 0.19878 0.26638 0.2631 RANDOM 39.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 -0.28 -0.55 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.494 r_dihedral_angle_3_deg 19.725 r_dihedral_angle_4_deg 15.188 r_scangle_it 8.203 r_scbond_it 5.704 r_dihedral_angle_1_deg 5.374 r_mcangle_it 3.357 r_mcbond_it 1.995 r_angle_refined_deg 1.193 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.494 r_dihedral_angle_3_deg 19.725 r_dihedral_angle_4_deg 15.188 r_scangle_it 8.203 r_scbond_it 5.704 r_dihedral_angle_1_deg 5.374 r_mcangle_it 3.357 r_mcbond_it 1.995 r_angle_refined_deg 1.193 r_nbtor_refined 0.307 r_symmetry_hbond_refined 0.287 r_nbd_refined 0.232 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.086 r_metal_ion_refined 0.073 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4443 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 4
Software Software Software Name Purpose XDS data scaling PHASES phasing REFMAC refinement XDS data reduction