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CRYSTAL STRUCTURE OF A PUTATIVE HYDROLASE (BVU_4111) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.90 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 NANODROP, 20.0% PEG 6000, 0.1M Bicine pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.97 58.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.903 α = 90 b = 75.903 β = 90 c = 323.386 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-12-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97982, 0.97966 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.399 100 0.143 0.143 4.824 7.1 44914 18.609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.95 100 0.778 0.778 1 7.2 3207
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.399 44778 2257 100 0.17 0.168 0.1774 0.209 0.2187 RANDOM 25.717
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.19 0.38 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.751 r_dihedral_angle_3_deg 11.594 r_dihedral_angle_4_deg 9.954 r_scangle_it 4.814 r_dihedral_angle_1_deg 4.004 r_scbond_it 4.002 r_mcangle_it 2.602 r_mcbond_it 1.861 r_angle_refined_deg 1.544 r_angle_other_deg 1.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.751 r_dihedral_angle_3_deg 11.594 r_dihedral_angle_4_deg 9.954 r_scangle_it 4.814 r_dihedral_angle_1_deg 4.004 r_scbond_it 4.002 r_mcangle_it 2.602 r_mcbond_it 1.861 r_angle_refined_deg 1.544 r_angle_other_deg 1.025 r_mcbond_other 0.453 r_symmetry_vdw_other 0.26 r_nbd_refined 0.21 r_xyhbond_nbd_other 0.205 r_xyhbond_nbd_refined 0.197 r_symmetry_hbond_refined 0.188 r_nbtor_refined 0.187 r_nbd_other 0.178 r_symmetry_vdw_refined 0.152 r_nbtor_other 0.088 r_chiral_restr 0.082 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3106 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing