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Crystal Structure of a Triacylglycerol Lipase from Penicillium Expansum at 1.3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 AS, PEG400, pH 8.0, vapor diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.26 45.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.27 α = 90 b = 88.27 β = 90 c = 126.616 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-03-26 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.9 APS 22-ID 2 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.3 50 99.9 0.062 40.13 13.4 123399
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.3 1.35 100 0.516 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 39.48 116585 6161 99.93 0.189 0.18801 0.1848 0.20784 0.2035 RANDOM 14.494
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.949 r_dihedral_angle_4_deg 20.03 r_dihedral_angle_3_deg 11.895 r_dihedral_angle_1_deg 7.03 r_scangle_it 5.63 r_scbond_it 3.937 r_mcangle_it 2.647 r_mcbond_it 1.65 r_angle_refined_deg 1.138 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.949 r_dihedral_angle_4_deg 20.03 r_dihedral_angle_3_deg 11.895 r_dihedral_angle_1_deg 7.03 r_scangle_it 5.63 r_scbond_it 3.937 r_mcangle_it 2.647 r_mcbond_it 1.65 r_angle_refined_deg 1.138 r_nbtor_refined 0.303 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.18 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.096 r_xyhbond_nbd_refined 0.08 r_gen_planes_refined 0.02 r_bond_refined_d 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3800 Nucleic Acid Atoms Solvent Atoms 358 Heterogen Atoms 76
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection