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Crystal structure of homo sapiens CLIC3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AHE PDB ENTRY 2AHE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 SOLUTION (15 MG/ML PROTEIN IN 20 MM HEPES*NAOH, PH 7.5, 200MM NACL) PLUS 3UL OF RESERVOIR SOLUTION (1.05M NH4SO4,0.225M LISO4, 0.1M TRIS-HCL PH 8.5), DROP EQUILIBRATED AGAINST 1 ML RESERVOIR SOLUTION , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.25 45.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.289 α = 69.11 b = 48.673 β = 80.97 c = 60.154 γ = 74.8
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 28.3 94 0.086 0.122 8.6 1.9 33742 24.86
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 86.6 0.464 0.656 1.9 1.9 4518
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AHE 1.95 28.03 33738 1697 93.98 0.234 0.231 0.2381 0.287 0.2858 RANDOM 13.401
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.04 0.08 -0.08 -0.07 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.859 r_dihedral_angle_4_deg 15.225 r_dihedral_angle_3_deg 15.149 r_dihedral_angle_1_deg 4.756 r_scangle_it 2.608 r_scbond_it 1.687 r_angle_refined_deg 1.051 r_mcangle_it 0.954 r_mcbond_it 0.565 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.859 r_dihedral_angle_4_deg 15.225 r_dihedral_angle_3_deg 15.149 r_dihedral_angle_1_deg 4.756 r_scangle_it 2.608 r_scbond_it 1.687 r_angle_refined_deg 1.051 r_mcangle_it 0.954 r_mcbond_it 0.565 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3504 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 20
Software Software Software Name Purpose DNA data collection AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling