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Crystal structure of the nucleotide binding domain FbpC complexed with ATP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 20% PEG 6000, 0.1M MES, 0.2M CaCl2, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.861 α = 90 b = 89.095 β = 90 c = 149.014 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 190 CCD ADSC QUANTUM 315r 2007-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9797 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 76.4 98 0.104 4 52525 51975 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 92.1 0.401 3.4 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION N? THROUGHOUT 1.9 52.27 49323 49321 2624 87.37 0.19784 0.19468 0.1855 0.25646 0.235 RANDOM 20.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.04 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.603 r_dihedral_angle_4_deg 23.227 r_dihedral_angle_3_deg 16.03 r_dihedral_angle_1_deg 6.328 r_scangle_it 4.248 r_scbond_it 2.645 r_angle_refined_deg 1.666 r_mcangle_it 1.576 r_mcbond_it 0.914 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.603 r_dihedral_angle_4_deg 23.227 r_dihedral_angle_3_deg 16.03 r_dihedral_angle_1_deg 6.328 r_scangle_it 4.248 r_scbond_it 2.645 r_angle_refined_deg 1.666 r_mcangle_it 1.576 r_mcbond_it 0.914 r_nbtor_refined 0.306 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.211 r_xyhbond_nbd_refined 0.168 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.116 r_metal_ion_refined 0.087 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5249 Nucleic Acid Atoms Solvent Atoms 522 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling SOLVE phasing