☰ Navigation Tabs
Crystal structure of spleen tyrosine kinase complexed with a 2-substituted 7-azaindole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XBB PDB ENTRY 1XBB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 283 25% PEG 4000, 0.2M AMMONIUM SULFATE, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 2.11 41.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.156 α = 80.78 b = 41.949 β = 90.78 c = 87.604 γ = 79.59
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0000 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 50 92.4 0.047 14.2 1.9 24069
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 62.5 0.28 2.1 1.5 1643
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1XBB 2.26 50 22847 1222 92.18 0.21623 0.21395 0.2105 0.25901 0.2526 RANDOM 48.532
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 -0.02 -0.13 3.51 -0.5 -2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.801 r_dihedral_angle_4_deg 22.75 r_dihedral_angle_3_deg 15.924 r_dihedral_angle_1_deg 5.714 r_scangle_it 2.021 r_angle_refined_deg 1.317 r_scbond_it 1.289 r_mcangle_it 1.206 r_mcbond_it 0.68 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.801 r_dihedral_angle_4_deg 22.75 r_dihedral_angle_3_deg 15.924 r_dihedral_angle_1_deg 5.714 r_scangle_it 2.021 r_angle_refined_deg 1.317 r_scbond_it 1.289 r_mcangle_it 1.206 r_mcbond_it 0.68 r_nbtor_refined 0.301 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.145 r_symmetry_hbond_refined 0.122 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4247 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement CNS refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing