Experiment: 3FPV

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.8	298	40% w/v PEG 400, 5% w/v PEG 3000, 100mM MES pH 5.8; Protein concentration of 14 mg/ml, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
1.95	37.03

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 152.522	α = 90
b = 152.522	β = 90
c = 152.522	γ = 90

Symmetry
Space Group	P 21 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MAR CCD 165 mm		2007-04-02	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	EMBL/DESY, HAMBURG BEAMLINE BW7A	0.9778	EMBL/DESY, HAMBURG	BW7A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	20	98.5	0.073	12.63	4.18	60060	59161	-3	-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.2	2.4	94.9		0.321	3.56	2.92	12979

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (I)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	Br Phases	2.2	19.86	-3	-3	60060	55408	2915	99.08	0.20461	0.20461	0.20149	0.26429	RANDOM	67.795

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.754
r_dihedral_angle_1_deg	35.225
r_dihedral_angle_4_deg	23.164
r_dihedral_angle_3_deg	19.632
r_scangle_it	0.446
r_angle_refined_deg	0.358
r_nbtor_refined	0.302
r_mcangle_it	0.239
r_scbond_it	0.235
r_symmetry_hbond_refined	0.213

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.754
r_dihedral_angle_1_deg	35.225
r_dihedral_angle_4_deg	23.164
r_dihedral_angle_3_deg	19.632
r_scangle_it	0.446
r_angle_refined_deg	0.358
r_nbtor_refined	0.302
r_mcangle_it	0.239
r_scbond_it	0.235
r_symmetry_hbond_refined	0.213
r_symmetry_vdw_refined	0.208
r_nbd_refined	0.183
r_xyhbond_nbd_refined	0.173
r_mcbond_it	0.131
r_chiral_restr	0.021
r_bond_refined_d	0.002
r_gen_planes_refined	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7976
Nucleic Acid Atoms
Solvent Atoms	513
Heterogen Atoms	8

Software

Software
Software Name	Purpose
MAR345	data collection
SOLVE	phasing
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.