X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529123% (w/v) PEG 4000, 300mM Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.7166.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.704α = 90
b = 70.491β = 90
c = 103.819γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2004-11-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA0.98SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75898.90.080.1524.72647226472
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.8980.43.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3fpr2.732.621352071799.010.230050.226050.30521RANDOM59.17
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.140.16-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.821
r_dihedral_angle_4_deg29.289
r_dihedral_angle_3_deg23.877
r_dihedral_angle_1_deg10.786
r_scangle_it7.706
r_scbond_it5.097
r_angle_refined_deg4.049
r_mcangle_it3.485
r_mcbond_it2.034
r_nbtor_refined0.358
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.821
r_dihedral_angle_4_deg29.289
r_dihedral_angle_3_deg23.877
r_dihedral_angle_1_deg10.786
r_scangle_it7.706
r_scbond_it5.097
r_angle_refined_deg4.049
r_mcangle_it3.485
r_mcbond_it2.034
r_nbtor_refined0.358
r_symmetry_hbond_refined0.332
r_nbd_refined0.311
r_chiral_restr0.238
r_symmetry_vdw_refined0.21
r_xyhbond_nbd_refined0.203
r_bond_refined_d0.045
r_gen_planes_refined0.015
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1895
Nucleic Acid Atoms
Solvent Atoms28
Heterogen Atoms84

Software

Software
Software NamePurpose
HKL-2000data collection
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling