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Structural and Functional Characterization of TRI3 Trichothecene 15-O-acetyltransferase from Fusarium sporotrichioides
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FOT PDB entry 3FOT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 2M Ammonium sulfate, 100 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.282 α = 90 b = 81.987 β = 90 c = 95.436 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2007-03-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 62.2 98 0.092 4.96 40792 40098 15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 90 0.373 1.9 2.35 5384
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3FOT 1.9 62.14 37463 1984 97.34 0.18319 0.18045 0.1803 0.23538 0.2345 RANDOM 14.602
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.75 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.512 r_dihedral_angle_4_deg 16.87 r_dihedral_angle_3_deg 13.271 r_dihedral_angle_1_deg 6.494 r_scangle_it 3.052 r_scbond_it 2.221 r_angle_refined_deg 1.654 r_mcangle_it 1.317 r_mcbond_it 0.869 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.512 r_dihedral_angle_4_deg 16.87 r_dihedral_angle_3_deg 13.271 r_dihedral_angle_1_deg 6.494 r_scangle_it 3.052 r_scbond_it 2.221 r_angle_refined_deg 1.654 r_mcangle_it 1.317 r_mcbond_it 0.869 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.116 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3986 Nucleic Acid Atoms Solvent Atoms 379 Heterogen Atoms 52
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling